IL_7A5F_106

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_106 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1115

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7A5F|1|A3|G|2470
7A5F|1|A3|G|2471
7A5F|1|A3|A|2472
7A5F|1|A3|A|2473
7A5F|1|A3|C|2474
7A5F|1|A3|U|2475
7A5F|1|A3|C|2476
7A5F|1|A3|G|2477
7A5F|1|A3|G|2478
*
7A5F|1|A3|C|2653
7A5F|1|A3|U|2654
7A5F|1|A3|G|2655
7A5F|1|A3|U|2656
7A5F|1|A3|C|2657

Current chains

Chain A3

16S rRNA

Nearby chains

Chain E3

39S ribosomal protein L3, mitochondrial

Chain L3

39S ribosomal protein L14, mitochondrial

Chain Q3

39S ribosomal protein L19, mitochondrial