IL_7A5F_112

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AAACUG*CACUAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_112 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2849

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7A5F|1|A6|A|1071
7A5F|1|A6|A|1072
7A5F|1|A6|A|1073
7A5F|1|A6|C|1074
7A5F|1|A6|U|1075
7A5F|1|A6|G|1076
*
7A5F|1|A6|C|1090
7A5F|1|A6|A|1091
7A5F|1|A6|C|1092
7A5F|1|A6|U|1093
7A5F|1|A6|A|1094
7A5F|1|A6|U|1095

Current chains

Chain A6

12S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain I6

28S ribosomal protein S11, mitochondrial

Chain Q6

28S ribosomal protein S21, mitochondrial