IL_7A5F_118

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AA*UAU

Length

5 nucleotides

Bulged bases

7A5F|1|A6|A|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_118 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.2424

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7A5F|1|A6|A|689
7A5F|1|A6|A|690
*
7A5F|1|A6|U|863
7A5F|1|A6|A|864
7A5F|1|A6|U|865

Current chains

Chain A6

12S rRNA

Nearby chains

Chain M6

28S ribosomal protein S16, mitochondrial

Chain T6

28S ribosomal protein S25, mitochondrial