IL_7A5G_062

3D structure

PDB id

7A5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.33 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5G_062 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2108

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7A5G|1|A6|G|766
7A5G|1|A6|C|767
7A5G|1|A6|A|768
7A5G|1|A6|C|769
*
7A5G|1|A6|G|781
7A5G|1|A6|C|782

Current chains

Chain A6

12S rRNA

Nearby chains

Chain L6

28S ribosomal protein S15, mitochondrial

Chain N6

28S ribosomal protein S17, mitochondrial

Chain d6

Aurora kinase A-interacting protein