IL_7A5K_031

3D structure

PDB id

7A5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosome in the post translocation state bound to mtEF-G1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

7A5K|1|A3|A|2601, 7A5K|1|A3|U|2607, 7A5K|1|A3|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5K_031 not in the Motif Atlas

Homologous match to IL_9DFE_077

Geometric discrepancy: 0.5578

The information below is about IL_9DFE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7A5K|1|A3|C|2597
7A5K|1|A3|A|2598
7A5K|1|A3|U|2599
7A5K|1|A3|A|2600
7A5K|1|A3|A|2601
7A5K|1|A3|U|2602
7A5K|1|A3|C|2603
7A5K|1|A3|A|2604
7A5K|1|A3|C|2605
7A5K|1|A3|U|2606
7A5K|1|A3|U|2607
7A5K|1|A3|G|2608
*
7A5K|1|A3|C|2624
7A5K|1|A3|C|2625
7A5K|1|A3|U|2626
7A5K|1|A3|G|2627

Current chains

Chain A3

16S rRNA

Nearby chains

Chain 24

Transfer RNA; tRNA

Chain A6

Small subunit ribosomal RNA; SSU rRNA

Chain d6

Aurora kinase A-interacting protein