Motif IL_84014.1 Version IL_84014.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-4 | 1-13 | 2-6 | 3-9 | 6-7 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_077 | 4WF9 | 0.2497 | 3 | X | LSU rRNA | C | 1961 | G | 1962 | A | 1963 | A | 1964 | U | 1966 | U | 1967 | C | 1968 | C | 1969 | U | 1970 | G | 1972 | * | C | 1988 | C | 1989 | G | 1991 | cWW | ncSH | ncHW | ntSW | cWW | |||
| 2 | IL_8B0X_138 | 8B0X | 0.2381 | 3 | a | LSU rRNA | C | 1938 | G | 1939 | A | 1940 | A | 1941 | 5MU | 1943 | U | 1944 | C | 1945 | C | 1946 | U | 1947 | G | 1949 | * | C | 1965 | 5MC | 1966 | G | 1968 | cWW | ncSH | cHW | ncSH | ntSW | cWW | ||
| 3 | IL_9DFE_077 | 9DFE | 0.2215 | 3 | 1A | LSU rRNA | C | 1934 | G | 1935 | A | 1936 | A | 1937 | 5MU | 1939 | U | 1940 | C | 1941 | 5MC | 1942 | U | 1943 | G | 1945 | * | C | 1961 | 5MC | 1962 | G | 1964 | cWW | ncSH | cHW | cSH | cWW | |||
| 4 | IL_8OI5_092 | 8OI5 | 0.0000 | 3 | 1 | LSU rRNA | C | 2255 | C | 2256 | A | 2257 | A | 2258 | U | 2260 | G | 2261 | C | 2262 | C | 2263 | U | 2264 | G | 2266 | * | C | 2282 | G | 2283 | G | 2285 | cWW | cHW | ntSW | ntHh | cWW | |||
| 5 | IL_8P9A_318 | 8P9A | 0.0638 | 3 | AR | LSU rRNA | C | 2277 | C | 2278 | A | 2279 | A | 2280 | U | 2282 | G | 2283 | C | 2284 | C | 2285 | U | 2286 | G | 2288 | * | C | 2304 | G | 2305 | G | 2307 | cWW | cHW | ncSH | tSW | ntHh | cWW | ||
| 6 | IL_9AXU_084 | 9AXU | 0.0719 | 3 | 2 | LSU rRNA | C | 2365 | C | 2366 | A | 2367 | A | 2368 | U | 2370 | G | 2371 | C | 2372 | C | 2373 | U | 2374 | G | 2376 | * | C | 2392 | G | 2393 | G | 2395 | cWW | cHW | ncSH | tSW | tHh | cWW | ||
| 7 | IL_8GLP_307 | 8GLP | 0.0968 | 3 | L5 | LSU rRNA | C | 3781 | 5MC | 3782 | A | 3783 | A | 3784 | U | 3786 | G | 3787 | C | 3788 | C | 3789 | U | 3790 | OMG | 3792 | * | OMC | 3808 | G | 3809 | G | 3811 | cWW | cHW | tSW | tHh | cWW | |||
| 8 | IL_9E6Q_074 | 9E6Q | 0.1300 | 3 | 1 | LSU rRNA | C | 2055 | 5MC | 2056 | A | 2057 | A | 2058 | U | 2060 | G | 2061 | C | 2062 | C | 2063 | U | 2064 | OMG | 2066 | * | C | 2082 | G | 2083 | G | 2085 | ncSW | cWW | cHW | tSW | ntHh | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAUGCCUCG*CGCG | 3 |
| CGAAAUUCCUUG*CCCG | 1 |
| CGAAAUCCUUG*CUG | 1 |
| CGAAA(5MU)UC(5MC)UUG*C(5MC)UG | 1 |
| C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG | 1 |
| C(5MC)AA(A2M)UGCCUU(OMG)*CGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAUGCCUC*GC | 3 |
| GAAAUUCCUU*CC | 1 |
| GAAA(5MU)UCCUU*(5MC)U | 1 |
| GAAA(5MU)UC(5MC)UU*(5MC)U | 1 |
| (5MC)AA(A2M)UGCCUC*GC | 1 |
| (5MC)AA(A2M)UGCCUU*GU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Heat map statistics
- Min 0.06 | Avg 0.21 | Max 0.76
Coloring options: