IL_7A5K_058

3D structure

PDB id

7A5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosome in the post translocation state bound to mtEF-G1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCU*AAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5K_058 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2025

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7A5K|1|A6|U|731
7A5K|1|A6|C|732
7A5K|1|A6|U|733
*
7A5K|1|A6|A|748
7A5K|1|A6|A|749
7A5K|1|A6|A|750
7A5K|1|A6|A|751

Current chains

Chain A6

12S rRNA

Nearby chains

Chain M6

28S ribosomal protein S16, mitochondrial

Chain N6

28S ribosomal protein S17, mitochondrial

Chain a6

28S ribosomal protein S34, mitochondrial