IL_7ABF_006

3D structure

PDB id

7ABF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-Bact-1 spliceosome core structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCC*GAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABF_006 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.364

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

7ABF|1|6|C|60
7ABF|1|6|C|61
7ABF|1|6|C|62
*
7ABF|1|6|G|72
7ABF|1|6|A|73
7ABF|1|6|U|74
7ABF|1|6|G|75

Current chains

Chain 6

U6 small nuclear RNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain X

WW domain-binding protein 11

Chain Z

MINX M3 RNA