IL_7ABZ_041

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

7ABZ|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_041 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.2491

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7ABZ|1|1|G|1087
7ABZ|1|1|A|1088
7ABZ|1|1|A|1089
7ABZ|1|1|A|1090
*
7ABZ|1|1|U|1101
7ABZ|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36