IL_7ABZ_073

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_073 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.3329

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7ABZ|1|1|U|1864
7ABZ|1|1|U|1865
7ABZ|1|1|A|1866
7ABZ|1|1|G|1867
*
7ABZ|1|1|C|1874
7ABZ|1|1|G|1875
7ABZ|1|1|A|1876
7ABZ|1|1|A|1877
7ABZ|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains