IL_7ABZ_134

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_134 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.1645

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ABZ|1|2|C|504
7ABZ|1|2|G|505
7ABZ|1|2|G|506
7ABZ|1|2|C|507
7ABZ|1|2|U|508
7ABZ|1|2|A|509
7ABZ|1|2|A|510
7ABZ|1|2|C|511
*
7ABZ|1|2|G|540
7ABZ|1|2|G|541

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12