IL_7ABZ_135

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7ABZ|1|2|A|532, 7ABZ|1|2|U|534, 7ABZ|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_135 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.1732

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ABZ|1|2|G|515
7ABZ|1|2|PSU|516
7ABZ|1|2|G|517
7ABZ|1|2|C|518
7ABZ|1|2|C|519
7ABZ|1|2|A|520
7ABZ|1|2|G|521
*
7ABZ|1|2|C|528
7ABZ|1|2|G|529
7ABZ|1|2|G|530
7ABZ|1|2|U|531
7ABZ|1|2|A|532
7ABZ|1|2|A|533
7ABZ|1|2|U|534
7ABZ|1|2|A|535
7ABZ|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain h

30S ribosomal protein S3

Chain q

30S ribosomal protein S12