IL_7AC7_017

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7AC7|1|1|G|801, 7AC7|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AC7_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1211

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7AC7|1|1|G|674
7AC7|1|1|A|675
7AC7|1|1|A|676
7AC7|1|1|A|677
7AC7|1|1|C|678
*
7AC7|1|1|G|799
7AC7|1|1|A|800
7AC7|1|1|G|801
7AC7|1|1|A|802
7AC7|1|1|U|803
7AC7|1|1|A|804
7AC7|1|1|G|805
7AC7|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15