IL_7AC7_130

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7AC7|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AC7_130 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2074

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7AC7|1|2|G|147
7AC7|1|2|G|148
7AC7|1|2|A|149
7AC7|1|2|U|150
7AC7|1|2|A|151
7AC7|1|2|A|152
7AC7|1|2|C|153
*
7AC7|1|2|G|168
7AC7|1|2|C|169
7AC7|1|2|U|170
7AC7|1|2|A|171
7AC7|1|2|A|172
7AC7|1|2|U|173
7AC7|1|2|A|174
7AC7|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20