IL_7AC7_209

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

7AC7|1|2|A|1492, 7AC7|1|2|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AC7_209 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.3047

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7AC7|1|2|5MC|1407
7AC7|1|2|A|1408
7AC7|1|2|C|1409
*
7AC7|1|2|G|1491
7AC7|1|2|A|1492
7AC7|1|2|A|1493
7AC7|1|2|G|1494

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

SsrA-binding protein

Chain 8

mRNA

Chain q

30S ribosomal protein S12