3D structure

PDB id
7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of translocated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCAAC*GGG
Length
8 nucleotides
Bulged bases
7ACJ|1|1|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ACJ_047 not in the Motif Atlas
Homologous match to IL_4WF9_050
Geometric discrepancy: 0.277
The information below is about IL_4WF9_050
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

7ACJ|1|1|C|1319
7ACJ|1|1|C|1320
7ACJ|1|1|A|1321
7ACJ|1|1|A|1322
7ACJ|1|1|C|1323
*
7ACJ|1|1|G|1331
7ACJ|1|1|G|1332
7ACJ|1|1|G|1333

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain T
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1262 s