3D structure

PDB id
7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of translocated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ACJ_048 not in the Motif Atlas
Homologous match to IL_7A0S_048
Geometric discrepancy: 0.1625
The information below is about IL_7A0S_048
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7ACJ|1|1|C|1351
7ACJ|1|1|U|1352
7ACJ|1|1|A|1353
7ACJ|1|1|A|1354
7ACJ|1|1|G|1355
*
7ACJ|1|1|C|1376
7ACJ|1|1|G|1377
7ACJ|1|1|A|1378
7ACJ|1|1|U|1379
7ACJ|1|1|G|1380

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain d
50S ribosomal protein L34

Coloring options:


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