IL_7ACJ_169

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7ACJ|1|2|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_169 not in the Motif Atlas

Geometric match to IL_4V9F_032

Geometric discrepancy: 0.2308

The information below is about IL_4V9F_032

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7ACJ|1|2|U|1440
7ACJ|1|2|A|1441
7ACJ|1|2|G|1442
*
7ACJ|1|2|C|1460
7ACJ|1|2|G|1461

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20