IL_7ACJ_179

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_179 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2156

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7ACJ|1|4|G|23
7ACJ|1|4|G|24
7ACJ|1|4|A|25
*
7ACJ|1|4|U|328
7ACJ|1|4|U|329

Current chains

Chain 4

transfer-messanger RNA (tmRNA)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain E

50S ribosomal protein L5