IL_7ACR_131

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7ACR|1|2|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACR_131 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.582

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ACR|1|2|G|515
7ACR|1|2|PSU|516
7ACR|1|2|G|517
7ACR|1|2|C|518
7ACR|1|2|C|519
7ACR|1|2|A|520
7ACR|1|2|G|521
*
7ACR|1|2|C|528
7ACR|1|2|G|529
7ACR|1|2|G|530
7ACR|1|2|U|531
7ACR|1|2|A|532
7ACR|1|2|A|533
7ACR|1|2|U|534
7ACR|1|2|A|535
7ACR|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12