IL_7ACR_143

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACR_143 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1147

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7ACR|1|2|G|887
7ACR|1|2|G|888
7ACR|1|2|A|889
7ACR|1|2|G|890
7ACR|1|2|U|891
7ACR|1|2|A|892
7ACR|1|2|C|893
7ACR|1|2|G|894
*
7ACR|1|2|U|905
7ACR|1|2|A|906
7ACR|1|2|A|907
7ACR|1|2|A|908
7ACR|1|2|A|909
7ACR|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12