IL_7AFD_001

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7AFD|1|1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFD_001 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2704

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AFD|1|1|G|933
7AFD|1|1|C|934
7AFD|1|1|A|935
*
7AFD|1|1|U|1380
7AFD|1|1|U|1381
7AFD|1|1|C|1382
7AFD|1|1|C|1383
7AFD|1|1|C|1384

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9