IL_7AFD_018

3D structure

PDB id

7AFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UUU*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFD_018 not in the Motif Atlas

Geometric match to IL_8C3A_413

Geometric discrepancy: 0.1541

The information below is about IL_8C3A_413

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

7AFD|1|1|U|1007
7AFD|1|1|U|1008
7AFD|1|1|U|1009
*
7AFD|1|1|G|1020
7AFD|1|1|A|1021
7AFD|1|1|A|1022

Current chains

Chain 1

16SrRNA of the head domain (residue C931 to G1386)

Nearby chains

Chain N

30S ribosomal protein S14