IL_7AFH_005

3D structure

PDB id

7AFH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUU*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFH_005 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1856

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7AFH|1|1|U|1007
7AFH|1|1|U|1008
7AFH|1|1|U|1009
*
7AFH|1|1|G|1020
7AFH|1|1|A|1021
7AFH|1|1|A|1022

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain N

30S ribosomal protein S14