Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7AFH_0011/1/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_7AFH_0021/1/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_7AFH_0031/1/1028:1033UNCG
geometric
HL_6SY6_001
HL_34617.5
HL_7AFH_0041/1/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_7AFH_0051/1/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_7AFH_0061/1/1134:1140No text annotation
homologous
HL_5J7L_025
HL_87954.2
HL_7AFH_0071/1/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_7AFH_0081/1/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_7AFH_0091/1/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_7AFH_0101/1/1356:1366No text annotation
homologous
HL_5J7L_029
HL_06226.4

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7AFH_0201/1/933:935,
1/1/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_7AFH_0021/1/953:954,
1/1/1226:1228
Minor groove platform
homologous
IL_5J7L_042
IL_51454.3
IL_7AFH_0031/1/993:997,
1/1/1044:1045
Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_7AFH_0041/1/998:999,
1/1/1041:1043
Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_7AFH_0051/1/1007:1009,
1/1/1020:1022
Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_7AFH_0061/1/1048:1050,
1/1/1208:1209
Single bulged U
geometric
IL_4LFB_042
IL_89505.4
IL_7AFH_0081/1/1052:1056,
1/1/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_7AFH_0091/1/1057:1058,
1/1/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_7AFH_0101/1/1060:1061,
1/1/1195:1197
Single bulged A
homologous
IL_5J7L_049
IL_31462.7
IL_7AFH_0111/1/1061:1063,
1/1/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_7AFH_0121/1/1124:1128,
1/1/1144:1149
No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_7AFH_0131/1/1129:1132,
1/1/1142:1143
Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_7AFH_0141/1/1158:1161,
1/1/1175:1181
No text annotation
homologous
IL_5J7L_053
IL_42032.1
IL_7AFH_0151/1/1247:1253,
1/1/1284:1290
No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_7AFH_0161/1/1255:1258,
1/1/1277:1282
180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_7AFH_0171/1/1259:1263,
1/1/1272:1276
Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_7AFH_0181/1/1303:1308,
1/1/1329:1334
No text annotation
homologous
IL_5J7L_057
IL_85536.2

Problematic loops

#loop idProblemSequence
IL_7AFH_001No text annotation
IL_7AFH_007No text annotation
IL_7AFH_019No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7AFH_0121/1/936:939,
1/1/1344:1350,
1/1/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_7AFH_0021/1/943:946,
1/1/1235:1237,
1/1/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_7AFH_0031/1/955:962,
1/1/973:984,
1/1/1221:1225
No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_7AFH_0041/1/990:993,
1/1/1045:1047,
1/1/1210:1215
No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_7AFH_0091/1/990:997,
1/1/1044:1047,
1/1/1210:1215
No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_7AFH_0051/1/1003:1006,
1/1/1023:1027,
1/1/1034:1037
No text annotation
J3_7AFH_0101/1/1063:1071,
1/1/1104:1113,
1/1/1187:1193
No text annotation
J3_7AFH_0131/1/1073:1074,
1/1/1083:1086,
1/1/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_7AFH_0071/1/1116:1118,
1/1/1155:1158,
1/1/1181:1184
No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_7AFH_0111/1/1116:1118,
1/1/1155:1161,
1/1/1175:1184
No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_7AFH_0081/1/1237:1241,
1/1/1296:1303,
1/1/1334:1337
No text annotation
homologous
J3_5J7L_011
J3_37047.6

Problematic loops

#loop idProblemSequence
J3_7AFH_001No text annotation
J3_7AFH_006No text annotation

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