IL_7AFI_012

3D structure

PDB id

7AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7AFI|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFI_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1609

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7AFI|1|A|G|147
7AFI|1|A|G|148
7AFI|1|A|A|149
7AFI|1|A|U|150
7AFI|1|A|A|151
7AFI|1|A|A|152
7AFI|1|A|C|153
*
7AFI|1|A|G|168
7AFI|1|A|C|169
7AFI|1|A|U|170
7AFI|1|A|A|171
7AFI|1|A|A|172
7AFI|1|A|U|173
7AFI|1|A|A|174
7AFI|1|A|C|175

Current chains

Chain A

16SrRNA

Nearby chains

Chain T

30S ribosomal protein S20