IL_7AFK_006

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7AFK|1|1|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFK_006 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1886

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7AFK|1|1|U|1052
7AFK|1|1|G|1053
7AFK|1|1|C|1054
7AFK|1|1|A|1055
7AFK|1|1|U|1056
*
7AFK|1|1|A|1204
7AFK|1|1|U|1205
7AFK|1|1|G|1206

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14