IL_7AFK_011

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFK_011 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.262

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

7AFK|1|1|C|1129
7AFK|1|1|A|1130
7AFK|1|1|G|1131
7AFK|1|1|C|1132
*
7AFK|1|1|G|1142
7AFK|1|1|G|1143

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10