IL_7AFL_012

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7AFL|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFL_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1763

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7AFL|1|A|G|147
7AFL|1|A|G|148
7AFL|1|A|A|149
7AFL|1|A|U|150
7AFL|1|A|A|151
7AFL|1|A|A|152
7AFL|1|A|C|153
*
7AFL|1|A|G|168
7AFL|1|A|C|169
7AFL|1|A|U|170
7AFL|1|A|A|171
7AFL|1|A|A|172
7AFL|1|A|U|173
7AFL|1|A|A|174
7AFL|1|A|C|175

Current chains

Chain A

16SrRNA

Nearby chains

Chain T

30S ribosomal protein S20