IL_7AFL_032

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

7AFL|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFL_032 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1518

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7AFL|1|A|U|662
7AFL|1|A|A|663
7AFL|1|A|G|664
7AFL|1|A|A|665
7AFL|1|A|G|666
*
7AFL|1|A|U|740
7AFL|1|A|G|741
7AFL|1|A|G|742
7AFL|1|A|A|743

Current chains

Chain A

16SrRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18