IL_7AFO_019

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFO_019 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7AFO|1|A|A|371
7AFO|1|A|C|372
7AFO|1|A|A|373
7AFO|1|A|A|374
7AFO|1|A|U|375
*
7AFO|1|A|A|389
7AFO|1|A|U|390

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain P

30S ribosomal protein S16