IL_7AFO_024

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFO_024 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1148

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7AFO|1|A|G|450
7AFO|1|A|A|451
7AFO|1|A|A|452
7AFO|1|A|G|453
7AFO|1|A|G|454
7AFO|1|A|G|455
*
7AFO|1|A|C|477
7AFO|1|A|A|478
7AFO|1|A|U|479
7AFO|1|A|U|480
7AFO|1|A|G|481
7AFO|1|A|A|482
7AFO|1|A|C|483

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain P

30S ribosomal protein S16