IL_7AJT_004

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGA*UAUAC

Length

10 nucleotides

Bulged bases

7AJT|1|D2|A|102, 7AJT|1|D2|A|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D2|G|100
7AJT|1|D2|G|101
7AJT|1|D2|A|102
7AJT|1|D2|G|103
7AJT|1|D2|A|104
*
7AJT|1|D2|U|140
7AJT|1|D2|A|141
7AJT|1|D2|U|142
7AJT|1|D2|A|143
7AJT|1|D2|C|144

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain UE

U3 small nucleolar RNA-associated protein 5

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UQ

NET1-associated nuclear protein 1