IL_7AJT_005

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

7AJT|1|D2|C|109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_005 not in the Motif Atlas

Geometric match to IL_5TBW_004

Geometric discrepancy: 0.3557

The information below is about IL_5TBW_004

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7AJT|1|D2|G|107
7AJT|1|D2|U|108
7AJT|1|D2|C|109
7AJT|1|D2|G|110
*
7AJT|1|D2|U|136
7AJT|1|D2|C|137

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain UE

U3 small nucleolar RNA-associated protein 5

Chain US

Nucleolar complex protein 4