IL_7AJT_007

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAUG*UUUA

Length

9 nucleotides

Bulged bases

7AJT|1|D2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D2|U|167
7AJT|1|D2|G|168
7AJT|1|D2|A|169
7AJT|1|D2|U|170
7AJT|1|D2|G|171
*
7AJT|1|D2|U|225
7AJT|1|D2|U|226
7AJT|1|D2|U|227
7AJT|1|D2|A|228

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CF

13 kDa ribonucleoprotein-associated protein

Chain UD

U3 small nucleolar RNA-associated protein 4

Chain UO

U3 small nucleolar RNA-associated protein 15

Chain UP

Bud site selection protein 21