IL_7AJT_009

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AAU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_009 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1709

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7AJT|1|D2|A|187
7AJT|1|D2|A|188
7AJT|1|D2|U|189
*
7AJT|1|D2|A|208
7AJT|1|D2|G|209
7AJT|1|D2|U|210

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UP

Bud site selection protein 21