IL_7AJT_013
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAAU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_013 not in the Motif Atlas
- Geometric match to IL_7A0S_091
- Geometric discrepancy: 0.3472
- The information below is about IL_7A0S_091
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_94991.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 17
Unit IDs
7AJT|1|D2|G|337
7AJT|1|D2|A|338
7AJT|1|D2|A|339
7AJT|1|D2|U|340
*
7AJT|1|D2|A|386
7AJT|1|D2|C|387
Current chains
- Chain D2
- 5'ETS RNA
Nearby chains
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain JN
- Protein FAF1
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UN
- U3 small nucleolar RNA-associated protein 14
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