IL_7AJT_014

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*UAA

Length

5 nucleotides

Bulged bases

7AJT|1|D2|A|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_014 not in the Motif Atlas

Geometric match to IL_5J7L_302

Geometric discrepancy: 0.3194

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7AJT|1|D2|U|340
7AJT|1|D2|G|341
*
7AJT|1|D2|U|384
7AJT|1|D2|A|385
7AJT|1|D2|A|386

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CI

U3 small nucleolar ribonucleoprotein protein IMP3

Chain JN

Protein FAF1

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UN

U3 small nucleolar RNA-associated protein 14