IL_7AJT_021

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

7AJT|1|D2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_021 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.3452

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7AJT|1|D2|G|414
7AJT|1|D2|U|415
*
7AJT|1|D2|A|439
7AJT|1|D2|U|440
7AJT|1|D2|C|441

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JM

rRNA-processing protein FCF2

Chain JQ

Regulator of rDNA transcription protein 14

Chain UZ

Ribosome biogenesis protein UTP30