IL_7AJT_022

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GU*ACC

Length

5 nucleotides

Bulged bases

7AJT|1|D2|C|432

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_022 not in the Motif Atlas

Geometric match to IL_9TKV_001

Geometric discrepancy: 0.3635

The information below is about IL_9TKV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7AJT|1|D2|G|424
7AJT|1|D2|U|425
*
7AJT|1|D2|A|431
7AJT|1|D2|C|432
7AJT|1|D2|C|433

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CB

rRNA 2'-O-methyltransferase fibrillarin

Chain JM

rRNA-processing protein FCF2

Chain UK

U3 small nucleolar RNA-associated protein 11