IL_7AJT_024

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCA*UAU

Length

7 nucleotides

Bulged bases

7AJT|1|D3|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_024 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.2481

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7AJT|1|D3|G|23
7AJT|1|D3|U|24
7AJT|1|D3|C|25
7AJT|1|D3|A|26
*
7AJT|1|D3|U|600
7AJT|1|D3|A|601
7AJT|1|D3|U|602

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14