IL_7AJT_059

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7AJT|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_059 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2824

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7AJT|1|D3|U|893
7AJT|1|D3|U|894
7AJT|1|D3|G|895
7AJT|1|D3|U|896
7AJT|1|D3|C|897
7AJT|1|D3|A|898
7AJT|1|D3|G|899
*
7AJT|1|D3|C|910
7AJT|1|D3|U|911
7AJT|1|D3|U|912
7AJT|1|D3|G|913
7AJT|1|D3|G|914
7AJT|1|D3|A|915
7AJT|1|D3|U|916
7AJT|1|D3|U|917
7AJT|1|D3|U|918
7AJT|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain UM

U3 small nucleolar RNA-associated protein 13