IL_7AJT_068

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGC*GAUGC

Length

9 nucleotides

Bulged bases

7AJT|1|D3|A|1436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_068 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.2887

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7AJT|1|D3|G|1271
7AJT|1|D3|U|1272
7AJT|1|D3|G|1273
7AJT|1|D3|C|1274
*
7AJT|1|D3|G|1435
7AJT|1|D3|A|1436
7AJT|1|D3|U|1437
7AJT|1|D3|G|1438
7AJT|1|D3|C|1439

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JH

Essential nuclear protein 1