IL_7AJT_069

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACUG*CGGGGAACGAG

Length

16 nucleotides

Bulged bases

7AJT|1|D3|C|1472

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|C|1470
7AJT|1|D3|A|1471
7AJT|1|D3|C|1472
7AJT|1|D3|U|1473
7AJT|1|D3|G|1474
*
7AJT|1|D3|C|1533
7AJT|1|D3|G|1534
7AJT|1|D3|G|1540
7AJT|1|D3|G|1541
7AJT|1|D3|G|1542
7AJT|1|D3|A|1569
7AJT|1|D3|A|1570
7AJT|1|D3|C|1571
7AJT|1|D3|G|1572
7AJT|1|D3|A|1573
7AJT|1|D3|G|1574

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DF

40S ribosomal protein S5

Chain DS

40S ribosomal protein S18-A

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1

Chain UB

Nucleolar complex protein 14

Chain UO

U3 small nucleolar RNA-associated protein 15