IL_7AJT_070
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUUGG*UCUUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_070 not in the Motif Atlas
- Geometric match to IL_9D9O_002
- Geometric discrepancy: 0.367
- The information below is about IL_9D9O_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7AJT|1|D3|C|1495
7AJT|1|D3|U|1496
7AJT|1|D3|U|1497
7AJT|1|D3|G|1498
7AJT|1|D3|G|1499
*
7AJT|1|D3|U|1508
7AJT|1|D3|C|1509
7AJT|1|D3|U|1510
7AJT|1|D3|U|1511
7AJT|1|D3|G|1512
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain JM
- rRNA-processing protein FCF2
- Chain UC
- Something about silencing protein 10
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UZ
- Ribosome biogenesis protein UTP30
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