IL_7AJT_089
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CCUU*AAGUG
- Length
- 9 nucleotides
- Bulged bases
- 7AJT|1|D2|U|382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_089 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2406
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7AJT|1|D2|C|342
7AJT|1|D2|C|343
7AJT|1|D2|U|344
7AJT|1|D2|U|345
*
7AJT|1|D2|A|379
7AJT|1|D2|A|380
7AJT|1|D2|G|381
7AJT|1|D2|U|382
7AJT|1|D2|G|383
Current chains
- Chain D2
- 5'ETS RNA
Nearby chains
- Chain JN
- Protein FAF1
- Chain JO
- KRR1 small subunit processome component
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UN
- U3 small nucleolar RNA-associated protein 14
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