IL_7AJT_101

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7AJT|1|D3|U|1657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_101 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.4783

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7AJT|1|D3|U|1656
7AJT|1|D3|U|1657
7AJT|1|D3|G|1658
*
7AJT|1|D3|U|1743
7AJT|1|D3|A|1744

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UL

U3 small nucleolar RNA-associated protein 12

Chain UM

U3 small nucleolar RNA-associated protein 13