IL_7AJT_105

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7AJT|1|D2|U|382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_105 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2531

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7AJT|1|D2|C|342
7AJT|1|D2|C|343
*
7AJT|1|D2|G|381
7AJT|1|D2|U|382
7AJT|1|D2|G|383

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain JN

Protein FAF1

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UN

U3 small nucleolar RNA-associated protein 14