IL_7AJT_110

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGCAAGUC*GCAGCCGCGGUAAUUCCAGC

Length

29 nucleotides

Bulged bases

7AJT|1|D3|A|556, 7AJT|1|D3|C|572, 7AJT|1|D3|C|573, 7AJT|1|D3|G|574, 7AJT|1|D3|A|579, 7AJT|1|D3|A|585, 7AJT|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|G|551
7AJT|1|D3|G|552
7AJT|1|D3|G|553
7AJT|1|D3|C|554
7AJT|1|D3|A|555
7AJT|1|D3|A|556
7AJT|1|D3|G|557
7AJT|1|D3|U|558
7AJT|1|D3|C|559
*
7AJT|1|D3|G|568
7AJT|1|D3|C|569
7AJT|1|D3|A|570
7AJT|1|D3|G|571
7AJT|1|D3|C|572
7AJT|1|D3|C|573
7AJT|1|D3|G|574
7AJT|1|D3|C|575
7AJT|1|D3|G|576
7AJT|1|D3|G|577
7AJT|1|D3|U|578
7AJT|1|D3|A|579
7AJT|1|D3|A|580
7AJT|1|D3|U|581
7AJT|1|D3|U|582
7AJT|1|D3|C|583
7AJT|1|D3|C|584
7AJT|1|D3|A|585
7AJT|1|D3|G|586
7AJT|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11