3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
ACU*ACU
Length
6 nucleotides
Bulged bases
7AJU|1|D2|C|469
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_004 not in the Motif Atlas
Geometric match to IL_5TBW_004
Geometric discrepancy: 0.2737
The information below is about IL_5TBW_004
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

7AJU|1|D2|A|468
7AJU|1|D2|C|469
7AJU|1|D2|U|470
*
7AJU|1|D4|A|48
7AJU|1|D4|C|49
7AJU|1|D4|U|50

Current chains

Chain D2
5'ETS RNA
Chain D4
U3 snoRNA

Nearby chains

Chain UG
U3 small nucleolar RNA-associated protein 7
Chain UJ
U3 small nucleolar RNA-associated protein 10

Coloring options:


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