IL_7AJU_004

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

7AJU|1|D2|C|469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_004 not in the Motif Atlas

Geometric match to IL_5TBW_004

Geometric discrepancy: 0.2737

The information below is about IL_5TBW_004

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7AJU|1|D2|A|468
7AJU|1|D2|C|469
7AJU|1|D2|U|470
*
7AJU|1|D4|A|48
7AJU|1|D4|C|49
7AJU|1|D4|U|50

Current chains

Chain D2

5'ETS RNA

Chain D4

U3 snoRNA

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7

Chain UJ

U3 small nucleolar RNA-associated protein 10